Search Proteomes/Genomes

 This page provides a selection of prokaryotic and fungal genomes, as well as C. elegans and Drosophila. Complete mammalian genomes are available on the Comprehensive Database FASTA search page.

FASTA Program information

Search Databases with FASTA
Statistical Significance from Shuffles
Find Internal Duplications (lalign/plalign)
Hydropathy/Secondary-Structure/seg
Retrieve result RID:
Show recent searches

Choose: (A) Program, (B) Query (sequence/accession), (C) Database and (D) Start Search:

(A) Program: Compare your own sequences:
(B) Query sequence:  Subset range: Use Subset range
Annotate Query Sequence (SwissProt accessions)

Upload annotation file: 
Entrez protein / Entrez DNA sequence browser
Uniprot sequence browser
Or upload query from file: 
Protein DNA (both-strands) DNA (forward only) DNA (rev-comp only)
Upload PSSM ASN.1 file: Help with PSSMs
(C) Database:      (D) Start Search
Protein DNA
Annotations:
Exclude low complexity (seg) Include isoforms
Comments (optional):
Other search options:
Scoring matrix:
 open:
 ext:
 Statistical estimates
Output limits:Max Show Histogram
E():
 Best E():
 aligns:
  Hide Alignments
 Hide Good Exons
Alignment Options: Highlight similarities differences compact differences.      Output format:

FASTA program information | Download FASTA | About the Author

Copyright © 1996, 1997, 1998, 1999, 2002, 2014, 2015 by William R. Pearson and The Rector & Visitors of the University of Virginia
The FASTA package is open source software, licensed under the Apache License, Version 2.0 (the "License"); you may not copy this software except in compliance with the License. You may obtain a copy of the License at:
http://www.apache.org/licenses/LICENSE-2.0