Hydropathy/Secondary-Structure/seg

 The Kyte-Doolittle, Garnier-Osguthorpe-Robson, and Chou-Fasman programs are available for teaching purposes; much better transmembrane prediction and secondary prediction programs are available.

memstat and TMpred are more accurate transmembrane predictors

psipred and PredictProtein produce much more accurate secondary structure predictions.

Search Databases with FASTA
Statistical Significance from Shuffles
Find Internal Duplications (lalign/plalign)

Choose:

(A) Program, (B) Protein (sequence/accession) (C) Analyze protein:
(A) Program:
 
Window:  
 
Show low complexity as:
Lower caseDomains
(B) Protein sequence: 
Entrez protein sequence browser
Upload sequence from file: 
(C) Do Analysis
 

FASTA program information | Download FASTA | About the Author

Copyright © 1996, 1997, 1998, 1999, 2002, 2014, 2015 by William R. Pearson and The Rector & Visitors of the University of Virginia
The FASTA package is open source software, licensed under the Apache License, Version 2.0 (the "License"); you may not copy this software except in compliance with the License. You may obtain a copy of the License at:
http://www.apache.org/licenses/LICENSE-2.0